PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G1690
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 238aa    MW: 27562.2 Da    PI: 7.7522
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G1690genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-152572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv+  + +G  +W+++++  g++R++k+c++rw +yl
      Gh_D09G1690 25 KGPWTAEEDKKLVNFMRTHGYYCWRAVPKLAGLRRCGKSCRLRWTNYL 72
                     79********************************************97 PP

2Myb_DNA-binding48.22.5e-1583122647
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +E++l +d++++lG++ W+ Ia++++ gRt++++k++w+++
      Gh_D09G1690  83 HDEEQLVIDLHARLGNR-WSQIAARLP-GRTDNEIKNYWNTH 122
                      68***************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-221673IPR009057Homeodomain-like
PROSITE profilePS5129415.3012072IPR017930Myb domain
SuperFamilySSF466893.18E-2722119IPR009057Homeodomain-like
SMARTSM007175.0E-122474IPR001005SANT/Myb domain
PfamPF002492.2E-142572IPR001005SANT/Myb domain
CDDcd001677.42E-92772No hitNo description
PROSITE profilePS5129425.15473127IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2474128IPR009057Homeodomain-like
SMARTSM007171.4E-1377125IPR001005SANT/Myb domain
PfamPF002491.0E-1383122IPR001005SANT/Myb domain
CDDcd001671.25E-984123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVGVDWCKVR GMGRQPCCDK LGVKKGPWTA EEDKKLVNFM RTHGYYCWRA VPKLAGLRRC  60
GKSCRLRWTN YLRPDLKRGL LNHDEEQLVI DLHARLGNRW SQIAARLPGR TDNEIKNYWN  120
THIKKKLIKM GIDPVTHEPL QKPDTPQNKP NLDPNQPENL SKSCAHEFSL PTGPDEWRSS  180
WESDDDPSIN LIWPEAFLRD LSENFHGTDS WWKEYSEIGT SSKEETCFSW LVGDAGEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27251277108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.185230.0stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6517830.0EF651783.1 Gossypium hirsutum transcription factor TF1 (TF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486460.11e-176PREDICTED: protein ODORANT1-like
SwissprotQ50EX62e-83ODO1_PETHY; Protein ODORANT1
TrEMBLA0A0D2T0Z31e-176A0A0D2T0Z3_G
STRINGPOPTR_0015s14600.11e-95(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.15e-85myb domain protein 85